The 3-day workshop on “Genomic Technologies in Antimicrobial Resistance (AMR) Research” organized by the Department of Infectious Diseases & Microbial Genomics, NUCSER was held from 21st to 23rd January 2026 at the Paneer campus. The workshop commenced on the first day with a formal inauguration ceremony, which included the traditional lighting of the lamp. Dr. Deekshit, Assoc. Professor, NUCSER welcomed the gathering. Chief Guest, Prof. (Dr) Sandeep Rai, Dean & Professor of Paediatric Surgery, K S Hegde Medical Academy, congratulated the Organizing Committee on conducting a highly relevant workshop.
Guest of Honour, Prof. (Dr) Anup Kumar Shetty, HoD, Microbiology, Fr. Muller Medical College, emphasized the importance of genomic approaches in addressing the global antimicrobial resistance (AMR) crisis. The function was presided over by Dr. Anirban Chakraborty, Director, NUCSER, who highlighted the crucial role of clinicians and researchers in combating AMR. Dr. Praveen Rai, HoD, Department of Infectious Diseases and Microbial Genomics, delivered the vote of thanks.
The technical sessions were handled by Dr. Krishna Kumar B, Dr. Prithvisagar K S, Dr. Pavan Gollapalli, Ms. Varsha P Shetty, Ms. Nisha Lakshmi and Mr Yajnesh Rai. The sessions commenced with an introduction to AMR research and an overview of next-generation sequencing (NGS) technologies and library preparation. Participants were introduced to relevant databases and bioinformatics tools, after which hands-on sessions were conducted on working with NGS data, including raw read quality assessment, trimming, MultiQC analysis and genome assembly of drug-resistant pathogens.
The second day focused on advanced genome analysis, beginning with sessions on scaffolding, genome statistics and coverage, followed by genome annotation and taxonomic identification via MLST. Comprehensive genome analysis techniques such as average nucleotide identity (ANI) and phylogenetic analysis were covered through theory and practical sessions. The afternoon sessions emphasized plasmid identification, antimicrobial resistance gene detection and pan-genome analysis.
On the third day, the workshop addressed virulence factors and phage identification, along with pan-genome analysis, followed by sessions on submitting NGS data to public databases and an introduction to metagenomics.
The workshop concluded with a Quiz session to assess participants’ learning, followed by the valedictory function, during which certificates were distributed and feedback was shared. The workshop included around 25 participants from different states of the country, including Haryana, Maharashtra, Andhra Pradesh, Tamil Nadu, Kerala and Karnataka. The workshop provided a comprehensive blend of theoretical knowledge and hands-on training in genomic technologies, significantly enhancing participants’ understanding of their application in antimicrobial resistance research.